Xueqi Li

Education

Publication

1. [BIBM'24] ProXplore: A GPU-Enhanced Protein Discovery Engine
   Zewen Sun, Peiheng Zhang, Xingzhuo Fu, and Xueqi Li (correspondence).
   International Conference on Bioinformatics and Biomedicine (BIBM24)
2. [HPCC'24] LazyCAT: Efficient Fine-Grained Cache Partitioning with Two Boundaries
   Chuanqi Zhang, Xueqi Li, Ninghui Sun, Yungang Bao, Sa Wang
   2024 IEEE International Conference on High Performance Computing and Communications (HPCC)
3. [ICCD'24] CoPIM: A Collaborative Scheduling Framework for Commodity Processing-in-memory Systems
   Shunchen Shi, Xueqi Li (correspondence), Zhaowu Pan, Peiheng Zhang, Ninghui Sun.
   The 42nd IEEE International Conference on Computer Design (ICCD24)
4. [JCST'24] FuHsi: Shifting Base-calling Closer to Sequencer via In-Cache Acceleration
   Yewen Li, Guangming Tan (correspondence), Xueqi Li (correspondence).
   Journal of Computer Science and Technology (JCST)
5. [ASPLOS'24] BeeZip: Towards An Organized and Scalable Architecture for Data Compression
   Ruihao Gao, Zhichun Li, Guangming Tan, Xueqi Li (correspondence).
   Proceedings of the 29th ACM International Conference on Architectural Support for Programming Languages and Operating Systems (ASPLOS24)
6. [BIBM'23] TransCaller: An End-to-end Accelerated Transformer-based Nanopore Basecaller on GPUs
   Di Xu, Peiheng Zhang, Yang Zhang, Shunchen Shi, Xueqi Li (correspondence).
   IEEE International Conference on Bioinformatics & Biomedicine (BIBM23)
   Towards AI4S, this is our first job!
7. [TPDS'23] Accelerating k-Shape Time Series Clustering Algorithm Using GPU
   Xun Wang, Ruibao Song, Junmin Xiao, Tong Li Xueqi Li (correspondence).
   Transactions on Parallel and Distributed Systems
8. [HPCA'23] NvWa: Enhancing Sequence Alignment Accelerator Throughput via Hardware Scheduling
   Yewen Li, Xueqi Li (correspondence), Ruihao Gao, Wanqi Liu, Guangming Tan
   The 29th IEEE International Symposium on High-Performance Computer Architecture (HPCA-29)
9. [SC'22] AlphaSparse: Generating High Performance SpMV Codes Directly from Sparse Matrices
   Zhen Du, Jiajia Li, Yinshan Wang, Xueqi Li, Guangming Tan, Ninghui Sun
   The International Conference for High Performance Computing, Networking, Storage, and Analysis (SC22)
10. [BIBM'22] Crescent: A GPU-based Targeted Nanopore Sequence Selector
    Tong Li, Xueqi Li (correspondence), Yewen Li, Ruibao Song, Xun Wang (correspondence)
    IEEE International Conference on Bioinformatics & Biomedicine (BIBM22)
11. [DAC'22] MetaZip: A High-throughput and Efficient Accelerator for DEFLATE
    Ruihao Gao, Xueqi Li (correspondence), Yewen Li, Xun Wang, Guangming Tan
    The 59th Design Automation Conference (DAC-59)
12. [JCST'21] PIM-Align: A Processing-in-Memory Architecture for FM-index Search Algorithm
    Xueqi Li, Guangming Tan, Ninghui Sun
    Journal of Computer Science and Technology (JCST) (IF: 1.506)
13. [MICRO'19] MEDAL: Scalable DIMM based Near Data Processing Accelerator for DNA Seeding Algorithm
    Wenqin Huangfu, Xueqi Li, Shuangchen Li, Xing Hu, Peng Gu, Yuan Xie
    The 52nd IEEE/ACM International Symposium on Microarchitecture (MICRO-52)
14. [DAC'19] Efficient System Architecture in the Era of Monolithic 3D: Dynamic Inter-tier Interconnect and Processing-in-Memory
    Dylan Stow, Itir Akgun, Wenqin Huangfu, Yuan Xie, Xueqi Li, Gabriel H. Loh
    The 56th Design Automation Conference (DAC-56)
15. [AACBB'19] Scalable In-Memory System for Genomic Analysis (publised work)
    Xueqi Li
    HPCA 2019 Workshop on Accelerator Architecture In Computational Biology and Bioinformatics
16. [ICPP'18] Accelerating FM-index Search for Genomic Data Processing
    Yuanrong Wang, Xueqi Li, Dawei Zang, Guangming Tan, Ninghui Sun
    The 47th International Conference on Parallel Processing
17. [AACBB'18] The Genomic Benchmark Suite: Characterization and Architecture Implications
    Xueqi Li, Guangming Tan, Yuanrong Wang, Ninghui Sun
    HPCA 2018 Workshop on Accelerator Architecture In Computational Biology and Bioinformatics
18. [PPoPP'18] High-performance genomic analysis framework with in-memory computing
    Xueqi Li, Guangming Tan, Bingchen Wang, Ninghui Sun
    The 23rd ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming
19. [BIBM'16] Accelerating Large-Scale Genomic Analysis with Spark
    Xueqi Li, Guangming Tan, Chunming Zhang, Xu Li, Zhonghai Zhang, Ninghui Sun
    The IEEE International Conference on Bioinformatics and Biomedicine

Funding and Awards

• RISC-V高性能处理器与基础软件 - (xxx, 子课题负责人, 2023.04-2030.12)
• NSFC Youth Program - (国家自然科学基金青年基金项目, F204, 2023.01-2025.12)
• National Key R&D Program of China (国家重点研发计划，总体组成员，子课题负责人, 2022.10-2025.10)
• National Postdoctoral Program for Innovative Talents (14 in Computer Science, 400 in China, 博新计划, 2021.07-2023.07)
• ········································································
• Before graduation
• ········································································
• National Scholarship (Ph.D.) - 2019
• Ray Wu Prize (13 Winners in China or Singapore) - 2018
• Travel Grants for HPCA - 2019
• TANG Lixin Award, University of Chinese Academy of Sciences (60/~45479 students) - 2018
• Travel Grants for SIGPLAN PAC/PPoPP 18 - 2018
• Director Special Award (XIA Peisu Award) - 2017
• National Scholarship - 2013 & 2012

Professional Activities

• PC Member: BIBM.
• Reviewer: TPDS, TC, TVLSI.
• Artifact Evaluation Committee, PPoPP, 2021, 2022
• Session Chair, NPC, 2020
• Data Space Summit and Computility Infrastructure Seminar, 2023